------------------------------- 138
------------------------------- 138
------------------------------- 251
er derivative ---------------- 118
er difference operator ---- 220
sation --------------------------- 1
sing map -------------- 236, 357
orithm------------------------ 317
metric --------------------------- 60
metric approach --------------- 30
lignment -------------------- 125
ssembly --------------------- 312
omology
nt ---------------------- 4, 6, 312
tatistics library ------------- 346
tatistics patterns ------------ 346
count data ----------- 246, 261
count matrix -------------- 262
reads ----------------------- 261
technology ---------------- 246
Fourier Transform -------- 236
approach --------------------- 252
mixture ---------------------- 190
nction -------------------- 96, 116
Analysis for Microarrays 251
mosome crossover -------- 382
c -------------------------------- 66
olcano plot ----------------- 259
erman alignment
m ----------------------------- 332
nsity curve -------------------- 20
ine --------------------------- 219
degree ----------------------- 211
spline ----------------------- 211
s ------------------------------ 212
ership function --------------- 58
ric data ---------------------- 211
oundaries --------------------- 61
tion -------------------------- 179
other ------------------------- 218
sub-strings ------------------------------- 346
sub-trees ------------------------------------ 39
summary --------------------- 175, 181, 264
summed squared error ----------------- 168
supervised learning ----------------------- 98
support vector machine ---- 114, 132, 192
support vectors -------------------------- 132
svm ---------------------------------------- 134
SVM -------------------------------------- 132
t statistic ---------------------------------- 248
table ----------------------------------------- 99
testing data ------------------------------- 107
the area under ROC curve ------------- 105
tight cluster ------------------------------ 273
tot.withinss --------------------------------- 56
total error --------------------------------- 168
trade off ---------------------------------- 186
TraDIS -------------------------------------- 15
training data ------------------------------ 107
transposon ---------------------------------- 13
transposon sequencing technology ----- 65
transposon statistic ------------------- 14, 66
transposon technology ------------------- 13
tree ---------------------------------------- 148
trial and error ------------------------------ 48
true signal -------------------------------- 214
Tukey mean difference plot ----------- 256
Tukey’s bi-square weight -------------- 222
Type I error ------------------------------ 249
Type II error ----------------------------- 249
unexplained variance ------------------- 172
univariate regression ------------------- 165
unsupervised learning -------------------- 37
up-regulated DEG ---------------------- 247
up-regulated gene ----------------------- 247
variable gap penalty -------------------- 317
vip ----------------------------------- 191, 193
viral proteins ------------------------------- 78
volcano plot ------------------------------ 257
volcanoplot ------------------------------ 258